A command-line tool for detecting and extracting single homeologous polymorphisms (SHPs) from the subgenomes of allopolyploid species. This tool integrates three main algorithms, WGA, VCF2ALIGNMENT ...

Global data demand continues to grow at an exponential rate, driven by emerging applications in cloud computing, artificial intelligence, autonomous systems, and high-bandwidth communications. Even ...

This toolkit provides a robust, feature-based image registration solution designed to streamline and enhance the alignment and analysis of images. Leveraging well-known algorithms, this tool enables ...

Alignment and sequencing errors are a major concern in molecular evolution, and this valuable study represents a welcome improvement for genome-wide scans of positive selection. This new method seems ...

Abstract: Genetic algorithm (GA) is one of the important and successful approaches in multiple sequences alignment (MSA) problem. In this paper, we propose an improved GA method, multiple ...

Current methods of assessing the similarity between proteins are based on protein sequence alignment. However, alignment is ineffective for intrinsically disordered regions (IDRs) given their rapid ...

Abstract: In molecular biology and genomics research, understanding genetic differences between species is extremely important. Comparing mitochondrial DNA sequence similarities can provide valuable ...

This work evaluates the hypothesis that proteins with an identical supersecondary structure (SSS) share a unique set of residues—SSS-determining residues—even though they may belong to different ...